Compilatore ifort

mpich2

Per prima cosa scaricare mpich da http://www.mpich.org/downloads/

Bisogna poi settare le variabili di compilazione per configure coerentemente con la propria installazione della macchina

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort CXXFLAGS=' -O2 -fPIC' CFLAGS=' -O2 -fPIC ' FCFLAGS=' -O2 -fPIC ' FFLAGS=' -O2 -fPIC ' ./configure --prefix=/opt/mpich3.2/

Quindi dare in sequenza i comandi:

make

make check

make install

Infine aggiungere al .bashrc la path e le lib di mpich

export PATH=$PATH:/opt/mpich3.2/bin

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mpich3.2/lib64

zlib

Scaricare zlib da http://www.zlib.net/

Esportare le variabili di sistema di ifort e mpich

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/lib/intel64

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mpich3.2/lib64

Impostare i settaggi coerenti con le path di installazione locali

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort MPICXX=/opt/mpich3.2/bin/mpicxx MPIFC=/opt/mpich3.2/bin/mpif90 MPICC=/opt/mpich3.2/bin/mpicc CPPFLAGS='-I/opt/intel/include -I/opt/mpich3.2/include' LDFLAGS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64' ./configure --prefix=/opt/zlib-1.2.8/

Quindi compilare e installare

make

make check

make install

szip

Scaricare szip da https://www.hdfgroup.org/doc_resource/SZIP/

Esportare le variabili di sistema di ifort e mpich

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/lib/intel64/

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mpich3.2/lib64

Impostare i settaggi coerenti con le path di installazione locali

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort MPICXX=/opt/mpich3.2/bin/mpicxx MPIFC=/opt/mpich3.2/bin/mpif90 MPICC=/opt/mpich3.2/bin/mpicc CPPFLAGS='-I/opt/intel/include -I/opt/mpich3.2/include' LDFLAGS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64' ./configure --prefix=/opt/szip-2.1

Quindi compilare

make

make check

make install

hdf5

Scaricare hdf5 da https://www.hdfgroup.org/HDF5/release/obtainsrc.html

Esportare le variabili di sistema di ifort e mpich

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/lib/intel64

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mpich3.2/lib64

Impostare i settaggi coerenti con le path di installazione locali

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort MPICXX=/opt/mpich3.2/bin/mpicxx MPIFC=/opt/mpich3.2/bin/mpif90 MPICC=/opt/mpich3.2/bin/mpicc ./configure --with-zlib=/opt/zlib-1.2.8/include,/opt/zlib-1.2.8/lib --with-szlib=/opt/szip-2.1 --prefix=/opt/hdf5-1.8.15/ --enable-fortran --enable-cxx

Quindi compilare e installare

make

make check

make install

netcdf per c

Scaricare netcdf per c da http://github.com/Unidata/netcdf-c/releases

Esportare le librerie di hdf5

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/hdf5-1.8.15/lib64

Settare la configurazione per il ./configure

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort MPICXX=/opt/mpich3.2/bin/mpicxx MPIFC=/opt/mpich3.2/bin/mpif90 MPICC=/opt/mpich3.2/bin/mpicc CPPFLAGS='-I/opt/zlib-1.2.8/include -I/opt/szip-2.1/include -I/opt/hdf5-1.8.15/include' LDFLAGS='-L/opt/zlib-1.2.8/lib -L/opt/szip-2.1/lib64 -L/opt/hdf5-1.8.15/lib64' ./configure --prefix=/opt/netcdf_4.4.0_icc

make

make check

make install

netcdf per fortran

Scaricare netcdf per fortran da http://github.com/Unidata/netcdf-c/releases

Esportare le librerie di hdf5 e netcdf-c

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/hdf5-1.8.15/lib64:/opt/netcdf_4.4.0_icc/lib64

Lanciare il ./configure coerente con le installazioni locali

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort MPICXX=/opt/mpich3.2/bin/mpicxx MPIFC=/opt/mpich3.2/bin/mpif90 MPICC=/opt/mpich3.2/bin/mpicc CPPFLAGS='-I/opt/zlib-1.2.8/include -I/opt/szip-2.1/include -I/opt/hdf5-1.8.15/include -I/opt/netcdf_4.4.0_icc/include' LDFLAGS='-L/opt/zlib-1.2.8/lib -L/opt/szip-2.1/lib64 -L/opt/hdf5-1.8.15/lib64 -L/opt/netcdf_4.4.0_icc/lib64' ./configure --prefix=/opt/netcdf_4.4.3_ifort

Quindi compilare e installare

make

make check

make install