Compilatore gcc e gfortran
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Versione del 30 mar 2017 alle 17:26 di MeteOceanWiki (Discussione | contributi)
How to install Delft3D with gfortran
1) Install all pre-requisites required (read Delft3D website)
2) compile mpich
./configure --prefix=/opt/mpich_gfor/ --enable-shared --enable-sharedlibs=gcc --enable-lib-depend F77=gfortran FC=gfortran CC=gcc CXX=g++ FCFLAGS=-fPIC CFLAGS=-fPIC CCFLAGS=-fPIC CXXFLAGS=-fPIC 2>&1 | tee c.txt make 2>&1 | tee m.txt make install 2>&1 | tee mi.txt
3) compile hdf5
LDFLAGS="-L/opt/mpich_gfor/lib64 -L/usr/local/lib" CPPFLAGS="-I/opt/mpich_gfor/include -I/usr/local/include" ./configure --prefix=/opt/hdf5_gfor --enable-shared --enable-hl --enable-fortran --enable-parallel
make make check make install
update PATH update LD_LIBRARY_PATH
4) compile netcdf
LDFLAGS="-L/opt/mpich_gfor/lib64 -L/opt/hdf5_gfor/lib64 -L/usr/local/lib" CPPFLAGS="-I/opt/mpich_gfor/include -I/opt/hdf5_gfor/include/ -I/usr/local/include" ./configure --enable-netcdf-4 --enable-dap --enable-shared --prefix=/opt/netcdf_4411_gfor
make make check make install
update PATH update LD_LIBRARY_PATH
5) compile netcdf fortran
LDFLAGS="-L/opt/mpich_gfor/lib64 -L/opt/hdf5_gfor/lib64 -L/usr/local/lib -L/opt/netcdf_4411_gfor/lib64" CPPFLAGS="-I/opt/mpich_gfor/include -I/opt/hdf5_gfor/include/ -I/usr/local/include -I/opt/netcdf_4411_gfor/include" ./configure --enable-shared --prefix=/opt/netcdf_444_fortran_gfor/
make make check make install
update PATH update LD_LIBRARY_PATH
6) compile Delft3D:
LD_LIBRARY_PATH=/opt/netcdf_4411_gfor/lib64/:/opt/netcdf_444_fortran_gfor/lib64:/opt/mpich_gfor/lib64:/usr/local/lib:/usr/local/lib64:/lib:/lib64 PATH=/opt/mpich3.2/bin:/usr/local/bin:/usr/bin:/sbin:/usr/sbin:/bin:/usr/bin/X11:/opt/netcdf_444_fortran_gfor/bin:/opt/netcdf_4411_gfor/bin
./build.sh .-gnu
This is my build.sh:
#! /bin/bash
#-------------------------------------------------------------------------------
# Top-Level Build Script for Delft3D Open Source Code
#
# There are command-line options to select Fortran compiler and debug or not.
#
# ToDo: Remove stripping of executables when the debug flag is set.
# It's even debatable whether stripping belongs in the build. I think not.
#
# ToDo: Don't preintialize the compiler, the user should do this himself
# so that he's aware exactly which version he's using. Besides, we can't
# keep up with every new compiler update. This script should be ultra-low
# maintanence.
#
# irv.elshoff@deltares.nl
# adri.mourits@deltares.nl
# 04 Feb 2015
#
# Copyright (C) Stichting Deltares, 2011-2013.
#-------------------------------------------------------------------------------
#
# WARNING WARNING WARNING WARNING WARNING WARNING WARNING WARNING WARNING
#
# This script contains references to Deltares specific systems.
# Use this script as an example and modify it to fit to your system.
# See file README for compiling without using this script.
#
#-------------------------------------------------------------------------------
# This script must be executed in the directory where it resides
orgdir=`pwd`
scriptdirname=`readlink \-f \$0`
maindir=`dirname $scriptdirname`
cd $maindir
# Default values
compiler=
configureArgs=
debug=0
noMake=0
platform='ia32'
useSp=0
#-------------------------------------------------------------------------------
function usage {
echo "Usage: `basename $0` <compiler> [-debug] [-make] [-64bit] [-sp] [-configure <args>] [-?]"
echo "Compiler is one of:"
echo " -gnu"
echo " -intel10"
echo " -intel11.0 (-intel11)"
echo " -intel11.1"
echo " -intel12"
echo " -intel14 (-intel14.0.3)"
}
#-------------------------------------------------------------------------------
# Add date time to logging info
function log {
echo "`date +%Y%m%d.%H%M%S` :: $*"
}
#-------------------------------------------------------------------------------
# Add a directory to an environment parameter
function addpath {
path="$1"
shift
for dir in $*; do
if [ -d $dir ]; then
eval "export $path=\"$dir:\$$path\""
fi
done
}
#-------------------------------------------------------------------------------
# Identify which program is used
function witch {
w=`which $1`
(
cd `dirname $w`
/bin/pwd
)
}
#===============================================================================
# Process command-line arguments
while [ $# -gt 0 ]; do
case $1 in
-64bit)
platform='intel64'
;;
-c|-configure)
shift
configureArgs="$1"
;;
-d|-debug)
debug=1
;;
-gnu)
compiler='gnu'
;;
-intel10)
compiler='intel10'
;;
-intel11.0|-intel11)
compiler='intel11.0'
;;
-intel11.1)
compiler='intel11.1'
;;
-intel12)
compiler='intel12'
;;
-intel14|-intel14.0.3)
compiler='intel14'
;;
-m|-make)
noMake=1
;;
-sp)
useSp=1
;;
-?)
usage
cd $orgdir
exit 0
;;
*)
usage
cd $orgdir
exit 1
;;
esac
shift
done
if [ "$compiler" == ]; then
echo "You must specify a compiler"
usage
cd $orgdir
exit 1
fi
mkdir -p logs
if [ "$BASH_ENV" != ]; then
echo 'Warning: Unsetting BASH_ENV'
unset BASH_ENV
fi
#===============================================================================
# Initialize Fortran compiler
case $compiler in
gnu)
ifortInit=""
iccInit=""
# addpath PATH /opt/gcc/bin
addpath PATH /usr/bin
# addpath LD_LIBRARY_PATH /opt/gcc/lib /opt/gcc/lib64
addpath LD_LIBRARY_PATH /usr/lib64
echo "Using GNU compilers in `witch gfortran`"
;;
intel14)
ifortInit=". /opt/intel/composer_xe_2013_sp1.3.174/bin/compilervars.sh $platform"
iccInit=""
echo "Using Intel 14.0.3 Fortran ($platform) compiler"
;;
intel12)
ifortInit=". /opt/intel/bin/ifortvars.sh $platform"
iccInit=""
echo "Using Intel 12 Fortran ($platform) compiler"
;;
intel11.1)
if [ "$platform" == 'intel64' ]; then
if [ -d /opt/intel/Compiler/11.1/072/bin/intel64 ]; then
ifortInit=". /opt/intel/Compiler/11.1/072/bin/intel64/ifortvars_intel64.sh $platform"
iccInit=""
idbInit=". /opt/intel/Compiler/11.1/072/bin/intel64/idbvars.sh"
echo "Using Intel 11.1 Fortran ($platform) compiler"
fi
else
if [ -d /opt/intel/Compiler/11.1/072 ]; then
ifortInit=". /opt/intel/Compiler/11.1/072/bin/ifortvars.sh $platform"
iccInit=""
idbInit=". /opt/intel/Compiler/11.1/072/bin/$platform/idbvars.sh"
echo "Using Intel 11.1 Fortran ($platform) compiler"
fi
fi
;;
intel11.0)
if [ -d /opt/intel/Compiler/11.0/081 ]; then
ifortInit=". /opt/intel/Compiler/11.0/081/bin/ifortvars.sh $platform"
idbInit=". /opt/intel/Compiler/11.0/081/bin/$platform/idbvars.sh"
echo "Using Intel 11.0 Fortran ($platform) compiler"
iccInit=". /opt/intel/Compiler/11.0/081/bin/iccvars.sh $platform"
echo "Using Intel 11.0 C ($platform) compiler"
fi
;;
intel10)
ifortInit='. /opt/intel/fc/10/bin/ifortvars.sh'
iccInit=""
idbInit='. /opt/intel/idb/10/bin/idbvars.sh'
echo "Using Intel 10 Fortran compiler (DEPRECATED!)"
;;
*)
ifortInit='/bin/true'
echo "Using default Linux Fortran compiler"
iccInit=""
;;
esac
if [ "$ifortInit" != ]; then
eval $ifortInit
if [ $? -ne 0 ]; then
echo 'Initialization of the Fortran compiler fails!'
cd $orgdir
exit 1
fi
fi
if [ "$iccInit" != ]; then
eval $iccInit
if [ $? -ne 0 ]; then
echo 'Initialization of the C compiler fails!'
cd $orgdir
exit 1
fi
fi
#===============================================================================
# Use the correct Autotools
# When the autotools are not installed in the default location,
# point to them explicitly
#addpath PATH \
# /opt/automake/bin \
# /opt/autoconf/bin \
# /opt/libtool/bin
#===============================================================================
# Additional library settings
#---------------------
# mpich2
if [ "$compiler" = 'gnu' ]; then
# addpath PATH /opt/mpich2-1.4.1-gcc-4.6.2/bin
addpath PATH /opt/mpich_gfor/bin
# export MPI_INCLUDE=/opt/mpich2-1.4.1-gcc-4.6.2/include
export MPI_INCLUDE=/opt/mpich_gfor/include
# export MPILIBS_ADDITIONAL="-L/opt/mpich2-1.4.1-gcc-4.6.2/lib -lfmpich -lmpich -lmpl"
export MPILIBS_ADDITIONAL="-L/opt/mpich_gfor/lib64 -lfmpich -lmpich -lmpl"
# export MPILIBS_ADDITIONAL=" "
# export MPIFC=/opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90
export MPIFC=/opt/mpich_gfor/bin/mpif90
else
# Intel compilers
addpath PATH /opt/mpich2-1.0.8-intel64/bin
export MPI_INCLUDE=/opt/mpich2-1.0.8-intel64-PIC/include
export MPILIBS_ADDITIONAL="-L/opt/mpich2-1.0.8-intel64-PIC/lib -lfmpich -lmpich"
if [ "$platform" = 'intel64' ]; then
export MPIFC=/opt/mpich2-1.0.8-intel64-PIC/bin/mpif90
fi
fi
#---------------------
# Additional compile flags
if [ "$compiler" = 'gnu' ]; then
fflags=
else
# Intel compilers
fflags='-threads'
fi
#---------------------
# Additional link flags/libraries
if [ "$compiler" = 'gnu' ]; then
export LDFLAGSMT_ADDITIONAL=" "
else
# Intel compilers
export LDFLAGSMT_ADDITIONAL="-lifcoremt"
fi
#---------------------
# netcdf
# export NETCDFROOT=/p/delft3d/opt/netcdf-4.1.3mt/intel11.1
export NETCDFROOT=/opt/netcdf_444_fortran_gfor #/opt/netcdf_4411_gfor
# export PKG_CONFIG_PATH=$NETCDFROOT/lib/pkgconfig:$PKG_CONFIG_PATH
export PKG_CONFIG_PATH=$NETCDFROOT/lib64/pkgconfig:$PKG_CONFIG_PATH
# export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$NETCDFROOT/lib
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$NETCDFROOT/lib64:/opt/netcdf_4411_gfor/lib64
#===============================================================================
echo "Current settings:"
echo "export ACLOCAL=\"$ACLOCAL\""
echo "export AUTOMAKE=\"$AUTOMAKE\""
echo "export AUTOHEADER=\"$AUTOHEADER\""
echo "export AUTOCONF=\"$AUTOCONF\""
echo "export AUTORECONF_FLAGS=\"$AUTORECONF_FLAGS\""
echo "export LIBTOOLIZE=\"$LIBTOOLIZE\""
echo "export LDFLAGS=\"$LDFLAGS\""
echo "export LDFLAGSMT_ADDITIONAL=\"$LDFLAGSMT_ADDITIONAL\""
echo "export LD_LIBRARY_PATH=\"$LD_LIBRARY_PATH\""
echo "export MPIFC=\"$MPIFC\""
echo "export MPI_INCLUDE=\"$MPI_INCLUDE\""
echo "export MPILIBS_ADDITIONAL=\"$MPILIBS_ADDITIONAL\""
echo "export PKG_CONFIG_PATH=\"$PKG_CONFIG_PATH\""
echo "export PATH=\"$PATH\""
echo
#===============================================================================
# Single precision executables require preparation before hand
if [ $useSp -eq 1 ]; then
(
cd utils_lgpl/deltares_common
command='scripts/changeprecision.tcl single'
log "Executing \"$command\" in \"$PWD\" for single-precision executables"
eval $command
if [ $? -ne 0 ]; then
log 'ABORT: Single-precision script failed'
cd $orgdir
exit 1
fi
)
fi
#===============================================================================
# autogen: sanity checks, libtoolize and autoreconf
log='logs/autogen.log'
command="./autogen.sh --verbose &> $log"
log "Running $command"
eval $command
if [ $? -ne 0 ]; then
log "Autogen fails!"
cd $orgdir
exit 1
fi
#===============================================================================
# configure: Create makefiles
log='logs/configure.log'
if [ $debug -eq 1 ]; then
flags='-g -O0'
else
flags='-O2'
fi
# fPIC is the result of the mixing of static and libtool libraries.
# If you want to avoid this you can use convenience libraries.
# Don't do this for non AMD64 because it will lead to worse performance.
# More information here:
# http://www.gentoo.org/proj/en/base/amd64/howtos/index.xml?full=1#book_part1_chap3
command=" \
CFLAGS='$flags $CFLAGS' \
CXXFLAGS='$flags $CXXFLAGS' \
AM_FFLAGS='$LDFLAGSMT_ADDITIONAL $AM_FFLAGS' \
FFLAGS='$flags $fflags $FFLAGS' \
AM_FCFLAGS='$LDFLAGSMT_ADDITIONAL $AM_FCFLAGS' \
FCFLAGS='$flags $fflags $FCFLAGS' \
AM_LDFLAGS='$LDFLAGSMT_ADDITIONAL $AM_LDFLAGS' \
./configure --prefix=`pwd` $configureArgs &> $log \
"
log "Running `echo $command | sed 's/ +/ /g'`"
eval $command
if [ $? -ne 0 ]; then
log "Configure fails!"
cd $orgdir
exit 1
fi
#===============================================================================
# make: Build and install everything
if [ $noMake -eq 1 ]; then
log "Skipping make; execute the following command before doing manual makes:"
echo $ifortInit
cd $orgdir
exit 0
fi
log='logs/make.log'
command="make ds-install &> $log"
log "Running $command"
eval $command
if [ $? -ne 0 ]; then
log "Make fails!"
cd $orgdir
exit 1
fi
log "Build finished"
cd $orgdir
exit 0
