Compilatore ifort

mpich2

Per prima cosa scaricare mpich da http://www.mpich.org/downloads/

Bisogna poi settare le variabili di compilazione per configure coerentemente con la propria installazione della macchina

export CC=/opt/intel/bin/icc
export CXX=/opt/intel/bin/icpc 
export FC=/opt/intel/bin/ifort
export F77=/opt/intel/bin/ifort 
export CXXFLAGS=' -O2 -fPIC' 
export CFLAGS=' -O2 -fPIC ' 
export FCFLAGS=' -O2 -fPIC ' 
export FFLAGS=' -O2 -fPIC ' 
./configure --prefix=/opt/mpich3.2/

Quindi dare in sequenza i comandi:

make
make check
make install

Infine aggiungere al .bashrc la path e le lib di mpich

export PATH=$PATH:/opt/mpich3.2/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mpich3.2/lib

zlib

Scaricare zlib da http://www.zlib.net/

wget https://www.zlib.net/zlib-1.2.11.tar.gz

Esportare le variabili di sistema di ifort e mpich

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/lib/intel64
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/mpich3.2/lib64

Impostare i settaggi coerenti con le path di installazione locali

export CC=/opt/intel/bin/icc
export CXX=/opt/intel/bin/icpc
export FC=/opt/intel/bin/ifort 
export F77=/opt/intel/bin/ifort 
export MPICXX=/opt/mpich3.2/bin/mpicxx
export MPIFC=/opt/mpich3.2/bin/mpif90 
export MPICC=/opt/mpich3.2/bin/mpicc 
export CPPFLAGS='-I/opt/intel/include -I/opt/mpich3.2/include'  
export LDFLAGS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64' 
./configure --prefix=/opt/zlib-1.2.11/

Quindi compilare e installare

make
make check
make install

szip

Scaricare szip da https://www.hdfgroup.org/doc_resource/SZIP/

wget https://support.hdfgroup.org/ftp/lib-external/szip/2.1.1/src/szip-2.1.1.tar.gz

Impostare i settaggi coerenti con le path di installazione locali

export CC=/opt/intel/bin/icc
export CXX=/opt/intel/bin/icpc
export FC=/opt/intel/bin/ifort 
export F77=/opt/intel/bin/ifort 
export MPICXX=/opt/mpich3.2/bin/mpicxx 
export MPIFC=/opt/mpich3.2/bin/mpif90 
export MPICC=/opt/mpich3.2/bin/mpicc
export CPPFLAGS='-I/opt/intel/include -I/opt/mpich3.2/include' 
export LDFLAGS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64' 
./configure --prefix=/opt/szip-2.1.1

Quindi compilare

make
make check
make install

hdf5

Scaricare hdf5 da https://www.hdfgroup.org/HDF5/release/obtainsrc.html

wget https://support.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.10.1.tar

Impostare i settaggi coerenti con le path di installazione locali

export CC=/opt/intel/bin/icc
export CXX=/opt/intel/bin/icpc 
export FC=/opt/intel/bin/ifort 
export F77=/opt/intel/bin/ifort 
export MPICXX=/opt/mpich3.2/bin/mpicxx 
export MPIFC=/opt/mpich3.2/bin/mpif90
export MPICC=/opt/mpich3.2/bin/mpicc
./configure --with-zlib=/opt/zlib-1.2.11/include,/opt/zlib-1.2.11/lib --with-szlib=/opt/szip-2.1.1 --prefix=/opt/hdf5-1.10.1/ --enable-fortran --enable-cxx 

Quindi compilare e installare

make
make check
make install

netcdf per c

Scaricare netcdf per c da https://www.unidata.ucar.edu/downloads/netcdf/index.jsp

wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.5.0.tar.gz

Esportare le librerie di hdf5

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/hdf5-1.10.1/lib64

Settare la configurazione per il ./configure

CC=/opt/intel/bin/icc
CXX=/opt/intel/bin/icpc
FC=/opt/intel/bin/ifort
F77=/opt/intel/bin/ifort
MPICXX=/opt/mpich3.2/bin/mpicxx
MPIFC=/opt/mpich3.2/bin/mpif90
MPICC=/opt/mpich3.2/bin/mpicc
CPPFLAGS='-I/opt/zlib-1.2.11/include -I/opt/szip-2.1.1/include -I/opt/hdf5-1.10.1/include' 
LDFLAGS='-L/opt/zlib-1.2.11/lib -L/opt/szip-2.1.1/lib64 -L/opt/hdf5-1.10.1/lib64' 
./configure --prefix=/opt/netcdf_4.5.0_icc 

Compilare e installare

make
make check
make install

netcdf per fortran

Scaricare netcdf per fortran da http://github.com/Unidata/netcdf-c/releases

wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-4.4.4.tar.gz

Esportare le librerie di hdf5 e netcdf-c

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/hdf5-1.10.1/lib64:/opt/netcdf_4.5.0_icc/lib64

Lanciare il ./configure coerente con le installazioni locali

CC=/opt/intel/bin/icc
CXX=/opt/intel/bin/icpc 
FC=/opt/intel/bin/ifort 
F77=/opt/intel/bin/ifort 
MPICXX=/opt/mpich3.2/bin/mpicxx 
MPIFC=/opt/mpich3.2/bin/mpif90 
MPICC=/opt/mpich3.2/bin/mpicc 
CPPFLAGS='-I/opt/zlib-1.2.11/include -I/opt/szip-2.1.1/include -I/opt/hdf5-1.10.1/include -I/opt/netcdf_4.5.0_icc/include' 
LDFLAGS='-L/opt/zlib-1.2.11/lib -L/opt/szip-2.1.1/lib64 -L/opt/hdf5-1.10.1/lib64 -L/opt/netcdf_4.5.0_icc/lib64' 
./configure --prefix=/opt/netcdf_4.4.4_ifort

Quindi compilare e installare

make
make check
make install

Compilazione di Delft3D

Innanzitutto verificare che le $LD_LIBRARY_PATH siano quelle giuste:

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/zlib-1.2.11/lib
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/szip-2.1.1/lib64
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/hdf5-1.10.1/lib64
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/netcdf_4.5.0_icc/lib64
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/netcdf_4.4.4_ifort/lib64

Poi bisogna settare le variabili per le librerie netcdf (VECCHIO MODO, NON FUNZIONA, VEDERE SEZIONE DOPO)

export NETCDFROOT=/opt/netcdf_4.4.3_ifort
export PKG_CONFIG_PATH=/$NETCDFROOT/lib64/pkgconfig:$PKG_CONFIG_PATH
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$NETCDFROOT/lib64
export NETCDFROOT=/opt/netcdf_4.4.0_icc
export PKG_CONFIG_PATH=/$NETCDFROOT/lib64/pkgconfig:$PKG_CONFIG_PATH
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$NETCDFROOT/lib64

Quindi impostare i settaggi di configurazione con ./configure

CC=/opt/intel/bin/icc CXX=/opt/intel/bin/icpc FC=/opt/intel/bin/ifort F77=/opt/intel/bin/ifort MPICXX=/opt/mpich3.2/bin/mpicxx MPIF77=/opt/mpich3.2/bin/mpif90 MPIFC=/opt/mpich3.2/bin/mpif90 FCLIBS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64 -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl -lmpifort' FLIBS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64 -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' LIBS=' -L/opt/mpich3.2/lib64 -L/opt/intel/lib/intel64 -lrt -lexpat -lstdc++ -limf -lsvml -lirng -lintlc -lmpich -lmpifort' PPFLAGS='-I/opt/zlib-1.2.8/include -I/opt/szip-2.1/include -I/opt/hdf5-1.8.15/include -I/opt/netcdf_4.4.0_icc/include -I/opt/netcdf_4.4.3_ifort/include' LDFLAGS='-L/opt/zlib-1.2.8/lib -L/opt/szip-2.1/lib64 -L/opt/hdf5-1.8.16/lib64 -L/opt/netcdf_4.4.0_icc/lib64 -L/opt/netcdf_4.4.3_ifort/lib64' ./configure --prefix=/opt/Delft3D/5740_ifort

Per far funzioanre netcdf bisogna fare questi settaggi

export CC=/opt/intel/bin/icc
export CXX=/opt/intel/bin/icpc
export FC=/opt/intel/bin/ifort
export F77=/opt/intel/bin/ifort
export MPICXX=/opt/mpich3.2/bin/mpicxx
export MPIF77=/opt/mpich3.2/bin/mpif90
export MPIFC=/opt/mpich3.2/bin/mpif90
export FCLIBS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64 -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl -lmpifort' 
export FLIBS='-L/opt/intel/lib/intel64 -L/opt/mpich3.2/lib64 -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' 
export LIBS='-L/opt/mpich3.2/lib64 -L/opt/intel/lib/intel64 -lrt -lexpat -lstdc++ -limf -lsvml -lirng -lintlc -lmpich -lmpifort' 
export FLIBS='L/opt/netcdf_4.4.4_ifort/lib -lnetcdff -L/opt/zlib-1.2.11/lib -L/opt/szip-2.1.1/lib64 -L/opt/hdf5-1.10.1/lib64 -L/opt/netcdf_4.5.0_icc/lib64 -lnetcdf -lnetcdf' 
export NETCDF_CFLAGS='-I/opt/netcdf_4.4.4_ifort/include -I/opt/zlib-1.2.11/include -I/opt/szip-2.1.1/include -I/opt/hdf5-1.10.1/include -I/opt/netcdf_4.5.0_icc/include' 
export NETCDF_LIBS='-L/opt/netcdf_4.4.4_ifort/lib -lnetcdff -L/opt/zlib-1.2.11/lib -L/opt/szip-2.1.1/lib64 -L/opt/hdf5-1.10.1/lib64 -L/opt/netcdf_4.5.0_icc/lib64 -lnetcdf -lnetcdf' 
export NETCDF_FORTRAN_LIBS=' -L/opt/netcdf_4.4.4_ifort/lib -lnetcdff -L/opt/zlib-1.2.11/lib -L/opt/szip-2.1.1/lib64 -L/opt/hdf5-1.10.1/lib64' 
export NETCDF_LIBS='-L/opt/netcdf_4.4.4_ifort/lib -lnetcdff -L/opt/zlib-1.2.11/lib -L/opt/szip-2.1.1/lib64 -L/opt/hdf5-1.10.1/lib64' 

./configure --prefix=/opt/delft3D-t-7959-ifort/ 

Infine compilare e installare

make
make install